PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763628.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 267aa    MW: 30454 Da    PI: 6.8893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-163482355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +g+WvAeI+d       +  r +lg++ taeeAa a+++a+  l+g
  XP_009763628.1 34 FVGVRQRH-SGKWVAEIKDtT-----KeIRMWLGTYETAEEAAHAYDQAAVLLRG 82
                    78*****9.7*********43.....35**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.68E-283389No hitNo description
Gene3DG3DSA:3.30.730.102.8E-273390IPR001471AP2/ERF domain
PROSITE profilePS5103219.0723390IPR001471AP2/ERF domain
SMARTSM003802.7E-323396IPR001471AP2/ERF domain
PRINTSPR003671.2E-63445IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-183491IPR016177DNA-binding domain
PfamPF008471.0E-103478IPR001471AP2/ERF domain
PRINTSPR003671.2E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEINFQKRQQ TEANSKNKLA KLKGKRRSKS RNNFVGVRQR HSGKWVAEIK DTTKEIRMWL  60
GTYETAEEAA HAYDQAAVLL RGSNTRTNFV TRVSQDSPLA SRIRNLLNSK KIAKQKCLDY  120
TVQSSLKISS SSSLIISNCD DSISSENTHT QLSFDQEIKE ESQLFHNTYI PDIDMGTSAY  180
SSFSSSYFSS LQPELSWGFG EGFEFAQELL DIPKNVISAE MGLTEYEIMK VERQISASLY  240
AVNGVRDYME SVHDHYESLW DHPLSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143393263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-74HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763628.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016487974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLM1C6Q42e-95M1C6Q4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609365e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-23related to AP2 11